wikipathways-collection

WikiPathways WP5516

• WikiPathways: WP5516 (classic)
• Species: Homo sapiens
• Scholia: WP5516

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 9
  • unknownTypes_knownDatasource: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 7
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 9

• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/e2670 (Antimicrobial peptides)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/b6238 (Cytokines)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/d14d1 (Cytokines)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/c6b1b (Glycocalyx)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/a2b6a (Inflammatory bowel disease)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/fb3b8 (Luminal content)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/e6fa9 (Maturation)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/dbd45 (Phagocytosis)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/ce26d (Proliferation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Data nodes with type ‘Unknown’

The following DataNodes have Unknown @Type: 1

http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/a1fd6 (Ensembl)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes_knownDatasource

Datanodes of unknown type

The following DataNodes have Unknown @Type: 7

• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/a1fd6 (Antigen presentation)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/c6b1b (Glycocalyx)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/a2b6a (Inflammatory bowel disease)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/fb3b8 (Luminal content)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/e6fa9 (Maturation)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/dbd45 (Phagocytosis)
• http://classic.wikipathways.org/instance/WP5516_r137255 http://rdf.wikipathways.org/Pathway/WP5516_r137255/DataNode/ce26d (Proliferation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes