wikipathways-collection

WikiPathways WP5502

• WikiPathways: WP5502 (classic)
• Species: Homo sapiens
• Scholia: WP5502

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 5
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/a66ab (Ciliogenesis )
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/f613d (DCP1-DCP2 decapping complex)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/ceb53 (Dynactin protein complex)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/e1604 (KIAA0753-CEP20-OFD1)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/b3bad (Neuronal migration)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/da2cd (RAPGEF4:cAMP)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/d039b (mRNA Degradation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 5

• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/f613d (DCP1-DCP2 decapping complex)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/ceb53 (Dynactin protein complex)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/f6914 (Dynein protein complex)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/e1604 (KIAA0753-CEP20-OFD1)
• http://classic.wikipathways.org/instance/WP5502_r136092 http://rdf.wikipathways.org/Pathway/WP5502_r136092/DataNode/da2cd (RAPGEF4:cAMP)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP5502_r136092 "Aortic Aneurysm, Familial Thoracic 4 (AAT4)
Berdon syndrome
Visceral myopathy 2" with graphId f4a44
http://classic.wikipathways.org/instance/WP5502_r136092 "Pseudoxanthoma elasticum" with graphId d1b72
http://classic.wikipathways.org/instance/WP5502_r136092 "Deafness, Autosomal Dominant 77 (DFNA77)
Rare Autosomal Dominant Non-Syndromic Sensorineural Deafness Type Dfna" with graphId f8e2c
http://classic.wikipathways.org/instance/WP5502_r136092 "Creutzfeldt-Jakob 
disease (sporadic)" with graphId b8d62
http://classic.wikipathways.org/instance/WP5502_r136092 "Schizophrenia 9 
Schizophrenia" with graphId d8451
http://classic.wikipathways.org/instance/WP5502_r136092 "Autism" with graphId e66f7