wikipathways-collection

WikiPathways WP5491

• WikiPathways: WP5491 (classic)
• Species: Homo sapiens
• Scholia: WP5491

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests
  • wrongEnsemblIDForCowSpecies: .. all OK!
  • wrongEnsemblIDForHumanSpecies: .x we found 1 problem(s):
    • Ensembl identifiers for wrong species for a human pathway: 1
  • wrongEnsemblIDForMouseSpecies: .. all OK!
  • wrongEnsemblIDForRatSpecies: .. all OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP5491_r135648 http://rdf.wikipathways.org/Pathway/WP5491_r135648/DataNode/c5857 (Germinal center development)
• http://classic.wikipathways.org/instance/WP5491_r135648 http://rdf.wikipathways.org/Pathway/WP5491_r135648/DataNode/acc39 (NF-KB)
• http://classic.wikipathways.org/instance/WP5491_r135648 http://rdf.wikipathways.org/Pathway/WP5491_r135648/DataNode/a0a7e (PI3K/AKT)
• http://classic.wikipathways.org/instance/WP5491_r135648 http://rdf.wikipathways.org/Pathway/WP5491_r135648/DataNode/bdfa2 (PI3K/AKT)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

EnsemblTests.wrongEnsemblIDForHumanSpecies

Ensembl identifiers for wrong species for a human pathway: 1

http://classic.wikipathways.org/instance/WP5491_r135648 -> TLR, ?