wikipathways-collection

WikiPathways WP5475

• WikiPathways: WP5475 (classic)
• Species: Homo sapiens
• Scholia: WP5475

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyDataSources: . all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • stockComments: .x we found 1 problem(s):
    • Number of graphical items with the comment “Type your comment here”: 1
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .. all OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 5
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

The pathway contains stock comments

Number of graphical items with the comment “Type your comment here”: 1

• http://www.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/DataNode/daf87

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneralTests/stockComments

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5475_r135540 "Proteosomal Degradation" with graphId f15c5

Possible MIM translocation

Interactions between identical nodes: 5

http://classic.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/WP/Interaction/a98ee "ERK1" (https://identifiers.org/ensembl/ENSG00000102882) and 
ERK1" (https://identifiers.org/ensembl/ENSG00000102882)
http://classic.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/WP/Interaction/a98ee "ERK1" (https://identifiers.org/ensembl/ENSG00000102882) and 
MAPK3" (https://identifiers.org/ensembl/ENSG00000102882)
http://classic.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/WP/Interaction/a98ee "MAPK3" (https://identifiers.org/ensembl/ENSG00000102882) and 
ERK1" (https://identifiers.org/ensembl/ENSG00000102882)
http://classic.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/WP/Interaction/a98ee "MAPK3" (https://identifiers.org/ensembl/ENSG00000102882) and 
MAPK3" (https://identifiers.org/ensembl/ENSG00000102882)
http://classic.wikipathways.org/instance/WP5475_r135540 http://rdf.wikipathways.org/Pathway/WP5475_r135540/WP/Interaction/id80163cbf "MDM2" (https://identifiers.org/ensembl/ENSG00000135679) and 
MDM2" (https://identifiers.org/ensembl/ENSG00000135679)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations