wikipathways-collection

WikiPathways WP5470

• WikiPathways: WP5470 (classic)
• Species: Homo sapiens
• Scholia: WP5470

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .x we found 1 problem(s):
    • Unexpected gene-protein conversions: 1
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 36
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Possibly wrong MIM type for Gene-Protein conversions

Unexpected gene-protein conversions: 1

Homo sapiens http://classic.wikipathways.org/instance/WP5470_r134264 -> https://identifiers.org/ensembl/ENSG00000148053 https://identifiers.org/ensembl/ENSG00000176697 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/idf4517d0c Did you mean wp:TranscriptionTranslation?

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/noGeneProteinConversions

Possible MIM translocation

Interactions between identical nodes: 36

• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddaa8a622 “BDNF” (https://identifiers.org/ensembl/ENSG00000176697) and BDNF” (https://identifiers.org/ensembl/ENSG00000176697)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/f1df5 “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/idf1e0b837 “KCC2” (https://identifiers.org/ensembl/ENSG00000124140) and KCC2” (https://identifiers.org/ensembl/ENSG00000124140)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id3c2a3eda “NTRK2” (https://identifiers.org/ensembl/ENSG00000148053) and NTRK2” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id3c2a3eda “NTRK2” (https://identifiers.org/ensembl/ENSG00000148053) and TrkB” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id3c2a3eda “TrkB” (https://identifiers.org/ensembl/ENSG00000148053) and NTRK2” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id3c2a3eda “TrkB” (https://identifiers.org/ensembl/ENSG00000148053) and TrkB” (https://identifiers.org/ensembl/ENSG00000148053)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/f566e “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id2f527b2 “GABRA1” (https://identifiers.org/ensembl/ENSG00000022355) and GABRA1” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id2f527b2 “GABRA1” (https://identifiers.org/ensembl/ENSG00000022355) and GABAaR” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id2f527b2 “GABAaR” (https://identifiers.org/ensembl/ENSG00000022355) and GABRA1” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id2f527b2 “GABAaR” (https://identifiers.org/ensembl/ENSG00000022355) and GABAaR” (https://identifiers.org/ensembl/ENSG00000022355)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id7bac3ede “Cl-“ (https://identifiers.org/pubchem.compound/312) and Cl-“ (https://identifiers.org/pubchem.compound/312)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/iddf7623d8 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “REST” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST/NRSF” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and REST” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/ide5a68b27 “NRSE” (https://identifiers.org/ensembl/ENSG00000084093) and NRSE” (https://identifiers.org/ensembl/ENSG00000084093)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/fcb5d “Cholesterol” (https://identifiers.org/chebi/CHEBI:16113) and Cholesterol” (https://identifiers.org/chebi/CHEBI:16113)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id4a916841 “BID” (https://identifiers.org/ensembl/ENSG00000015475) and BID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id4a916841 “BID” (https://identifiers.org/ensembl/ENSG00000015475) and tBID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id4a916841 “tBID” (https://identifiers.org/ensembl/ENSG00000015475) and BID” (https://identifiers.org/ensembl/ENSG00000015475)
• http://classic.wikipathways.org/instance/WP5470_r134264 http://rdf.wikipathways.org/Pathway/WP5470_r134264/WP/Interaction/id4a916841 “tBID” (https://identifiers.org/ensembl/ENSG00000015475) and tBID” (https://identifiers.org/ensembl/ENSG00000015475)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations