wikipathways-collection
WikiPathways WP5422
- WikiPathways: WP5422 (classic)
- Species: Homo sapiens
- Scholia: WP5422
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .x we found 1 problem(s):
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 117
- Number of assertions: 235
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 12
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/b90ed (MAP2K1 )
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/ad9cf (MAP2K2)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/a258d (MAPK1 )
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/c0e81 (MAPK1 )
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/f31d7 (MAPK1 )
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/c55ea (MAPK3)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/cf4a2 (MAPK3)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/f16c1 (MAPK3)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/b0b6f (MMP9)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/d3ce1 (NFKBIA)
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/c267c (RELA )
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/cd800 (RELA )
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Datanodes of unknown type
The following DataNodes have Unknown @Type: 1
- http://classic.wikipathways.org/instance/WP5422_r129674 http://rdf.wikipathways.org/Pathway/WP5422_r129674/DataNode/d4f7b (Protein)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes
InteractionTests.interactionsWithLabels
Interactions found that involve Labels: 5
http://classic.wikipathways.org/instance/WP5422_r129674 "A2B Receptor" with graphId a8865
http://classic.wikipathways.org/instance/WP5422_r129674 "CY" with graphId f68ef
http://classic.wikipathways.org/instance/WP5422_r129674 "NU" with graphId dcadb
http://classic.wikipathways.org/instance/WP5422_r129674 "NU" with graphId d7a7a
http://classic.wikipathways.org/instance/WP5422_r129674 "CY" with graphId d9499