wikipathways-collection
WikiPathways WP5389
- WikiPathways: WP5389 (classic)
- Species: Homo sapiens
- Scholia: WP5389
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .x we found 1 problem(s):
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests
- nonNumericPubMedIDs: .. all OK!
- unexpectedPubMedIdentifier: .. all OK!
- zeroPubMedIDs: .. all OK!
- atLeastOneReference: .x we found 1 problem(s):
- citesRetractedArticle: .. all OK!
- outdatedPubMedIdentifiers: .. all OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 117
- Number of assertions: 235
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 6
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/e1400 (Cell death)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/acfe1 (DNA adduct formation)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/a78b6 (DNA damage)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/b435a (Fibrosis)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/ab673 (Inflammation)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/c6349 (Kidney failure)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Datanodes of unknown type
The following DataNodes have Unknown @Type: 6
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/e1400 (Cell death)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/acfe1 (DNA adduct formation)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/a78b6 (DNA damage)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/b435a (Fibrosis)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/ab673 (Inflammation)
- http://classic.wikipathways.org/instance/WP5389_r134444 http://rdf.wikipathways.org/Pathway/WP5389_r134444/DataNode/c6349 (Kidney failure)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes
At least one reference
Found 1 pathways with zero (PubMed) references
- http://classic.wikipathways.org/instance/WP5389_r134444 ‘DNA adduct formation leading to kidney failure’ in Homo sapiens has zero references;
More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference