wikipathways-collection

WikiPathways WP5381

• WikiPathways: WP5381 (classic)
• Species: Homo sapiens
• Scholia: WP5381

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 22
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/aa1c6 ()
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/b2d71 ()
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/c175c ()
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/fb145 ()
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/fb5f2 ()
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/ef5b9 (Metabolite)
• http://classic.wikipathways.org/instance/WP5381_r134446 http://rdf.wikipathways.org/Pathway/WP5381_r134446/DataNode/f9cf6 (Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 22

http://classic.wikipathways.org/instance/WP5381_r134446 "mitochondrial fusion" with graphId ce488
http://classic.wikipathways.org/instance/WP5381_r134446 "Initiation of chromosomal
DNA replication " with graphId aaa3e
http://classic.wikipathways.org/instance/WP5381_r134446 "synthesis of methionine, thymidylate, 
and purines in the cytoplasm." with graphId fb234
http://classic.wikipathways.org/instance/WP5381_r134446 "specific function
unknown" with graphId f06de
http://classic.wikipathways.org/instance/WP5381_r134446 "Protects mitochondrial DNA 
replication from excess dTTP" with graphId eb1d7
http://classic.wikipathways.org/instance/WP5381_r134446 "regulation of 
epithelial cell polarity" with graphId f30d8
http://classic.wikipathways.org/instance/WP5381_r134446 "Mitochondrial fission" with graphId c84cc
http://classic.wikipathways.org/instance/WP5381_r134446 "mitochondrial 
fission " with graphId ab2f4
http://classic.wikipathways.org/instance/WP5381_r134446 "cytochrome C 
release
" with graphId de8d6
http://classic.wikipathways.org/instance/WP5381_r134446 "traffics and delivers critical molecules 
required for stereocilia development " with graphId bbd8d
http://classic.wikipathways.org/instance/WP5381_r134446 "regulation of 
endothelial senescence" with graphId a7d0d
http://classic.wikipathways.org/instance/WP5381_r134446 "RNA stability and 
cellular stress response" with graphId ee4df
http://classic.wikipathways.org/instance/WP5381_r134446 "regulation of 
cytoskeleton " with graphId cab7b
http://classic.wikipathways.org/instance/WP5381_r134446 "homeostatic functions such as 
feeding, sleeping and temperature
but also role in inflammation and pain 
" with graphId e9acf
http://classic.wikipathways.org/instance/WP5381_r134446 "Axonogenesis" with graphId e3c46
http://classic.wikipathways.org/instance/WP5381_r134446 "decatenation and 
segregation of mtDNA " with graphId ae1f2
http://classic.wikipathways.org/instance/WP5381_r134446 "Gluconeogenesis" with graphId a3381
http://classic.wikipathways.org/instance/WP5381_r134446 "increase and stabilization 
of actin filaments " with graphId d8830
http://classic.wikipathways.org/instance/WP5381_r134446 "
plasma cell differentiation" with graphId ed541
http://classic.wikipathways.org/instance/WP5381_r134446 "late meiotic and haploid 
phases of spermatogenesis" with graphId e477e
http://classic.wikipathways.org/instance/WP5381_r134446 "Midbrain dopaminergic 
neurogenesis" with graphId b2be6
http://classic.wikipathways.org/instance/WP5381_r134446 "assembly of the axoneme 
during spermiogenesis " with graphId a244c