wikipathways-collection

WikiPathways WP5368

• WikiPathways: WP5368 (classic)
• Species: Homo sapiens
• Scholia: WP5368

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP5368_r134449 STS with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Possible MIM translocation

Interactions between identical nodes: 3

• http://classic.wikipathways.org/instance/WP5368_r134449 http://rdf.wikipathways.org/Pathway/WP5368_r134449/WP/Interaction/id725a25d7 “Estradiol-17beta” (https://identifiers.org/chebi/CHEBI:16469) and Estradiol-17beta” (https://identifiers.org/chebi/CHEBI:16469)
• http://classic.wikipathways.org/instance/WP5368_r134449 http://rdf.wikipathways.org/Pathway/WP5368_r134449/WP/Interaction/ide6322db8 “DHEA-S” (https://identifiers.org/chebi/CHEBI:16814) and DHEA-S” (https://identifiers.org/chebi/CHEBI:16814)
• http://classic.wikipathways.org/instance/WP5368_r134449 http://rdf.wikipathways.org/Pathway/WP5368_r134449/WP/Interaction/id777f3bad “estrone sulphate” (https://identifiers.org/chebi/CHEBI:17474) and estrone sulphate” (https://identifiers.org/chebi/CHEBI:17474)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations