wikipathways-collection

WikiPathways WP5367

• WikiPathways: WP5367 (classic)
• Species: Homo sapiens
• Scholia: WP5367

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP5367_r129307 http://rdf.wikipathways.org/Pathway/WP5367_r129307/DataNode/a7047 ()
• http://classic.wikipathways.org/instance/WP5367_r129307 http://rdf.wikipathways.org/Pathway/WP5367_r129307/DataNode/ad1a4 ()

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 6

• http://classic.wikipathways.org/instance/WP5367_r129307 “Methylation of Gln-105 on H2A” with graphId c9842
• http://classic.wikipathways.org/instance/WP5367_r129307 “DDX21 helicase activity” with graphId fecce
• http://classic.wikipathways.org/instance/WP5367_r129307 “Removal of chromatin-bound PCNA and degradation during NER” with graphId b8ab0
• http://classic.wikipathways.org/instance/WP5367_r129307 “Enhances transcriptional activity towards cAMP responsive genes” with graphId e3f1f
• http://classic.wikipathways.org/instance/WP5367_r129307 “Association of RNA polymerase I with the rDNA promotor region” with graphId b85cd
• http://classic.wikipathways.org/instance/WP5367_r129307 “Acetylates histones” with graphId e405b

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels