wikipathways-collection

WikiPathways WP5366

• WikiPathways: WP5366 (classic)
• Species: Homo sapiens
• Scholia: WP5366

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 24
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests
  • outdatedIdentifiers: .. all OK!
  • deletedIdentifiers: .. all OK!
  • unreviewedIdentifiers: .. all OK!
  • incorrectIdentifiers: .. all OK!
  • allP62805: .x we found 1 problem(s):
    • Potentially imprecise UniProt identifier: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/b9e37 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/be3f7 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/efebb ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/f5114 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/fc54e ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/b6424 (Metabolite)
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/eac2b (Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 24

• http://classic.wikipathways.org/instance/WP5366_r134450 “cell proliferation, survival, growth and differentiation” with graphId a9da5
• http://classic.wikipathways.org/instance/WP5366_r134450 “actin stabilization” with graphId e7e47
• http://classic.wikipathways.org/instance/WP5366_r134450 “vesicle exocytosis” with graphId aa603
• http://classic.wikipathways.org/instance/WP5366_r134450 “recycling of endocytosed proteins” with graphId ac39f
• http://classic.wikipathways.org/instance/WP5366_r134450 “second messengers in cell growth, survival and movement” with graphId c94fb
• http://classic.wikipathways.org/instance/WP5366_r134450 “cell cycle progression G1/S phase” with graphId d3743
• http://classic.wikipathways.org/instance/WP5366_r134450 “function unknown” with graphId e9af6
• http://classic.wikipathways.org/instance/WP5366_r134450 “stimulates proliferation” with graphId d0ad2
• http://classic.wikipathways.org/instance/WP5366_r134450 “restriction of excitatory synaps formation in the hippocampus” with graphId fcacf
• http://classic.wikipathways.org/instance/WP5366_r134450 “dendritic filopodia formation and contributing to spinogenesis (hippocampal nerves)” with graphId d902d
• http://classic.wikipathways.org/instance/WP5366_r134450 “replication primer formation in mtDNA” with graphId a799a
• http://classic.wikipathways.org/instance/WP5366_r134450 “granulocyte differentiation and functionality of hematopoietic progenitor cells” with graphId f370b
• http://classic.wikipathways.org/instance/WP5366_r134450 “axon growth and regeneration” with graphId dcb1c
• http://classic.wikipathways.org/instance/WP5366_r134450 “progression cell cycle” with graphId d939e
• http://classic.wikipathways.org/instance/WP5366_r134450 “restart of stalled replication forks “ with graphId cb5e7
• http://classic.wikipathways.org/instance/WP5366_r134450 “Ribosome formation and cell growth” with graphId a0110
• http://classic.wikipathways.org/instance/WP5366_r134450 “change behavior of AML cells” with graphId cc6aa
• http://classic.wikipathways.org/instance/WP5366_r134450 “transcription of mtDNA into RNA “ with graphId d7a83
• http://classic.wikipathways.org/instance/WP5366_r134450 “Involved in the regulation of dendritic spine development, contributing to the regulation of dendritic branching and filopodia extension “ with graphId f8321
• http://classic.wikipathways.org/instance/WP5366_r134450 “calcium influx “ with graphId f61a8
• http://classic.wikipathways.org/instance/WP5366_r134450 “DNA-damage induced apoptosis “ with graphId ebb46
• http://classic.wikipathways.org/instance/WP5366_r134450 “function unknown “ with graphId a5a8f
• http://classic.wikipathways.org/instance/WP5366_r134450 “Ciliogenesis “ with graphId bd13b
• http://classic.wikipathways.org/instance/WP5366_r134450 “microtubules stabillity” with graphId fda2b

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

P62805 matches 14 genes

Potentially imprecise UniProt identifier: 1

• http://classic.wikipathways.org/instance/WP5366_r134450 Histone H4 uses P62805

More details at https://www.wikipathways.org/WikiPathwaysCurator/UniProtTests/allP62805