wikipathways-collection

WikiPathways WP5366

• WikiPathways: WP5366 (classic)
• Species: Homo sapiens
• Scholia: WP5366

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 24
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests
  • outdatedIdentifiers: .. all OK!
  • deletedIdentifiers: .. all OK!
  • unreviewedIdentifiers: .. all OK!
  • incorrectIdentifiers: .. all OK!
  • allP62805: .x we found 1 problem(s):
    • Potentially imprecise UniProt identifier: 1
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/b9e37 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/be3f7 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/efebb ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/f5114 ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/fc54e ()
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/b6424 (Metabolite)
• http://classic.wikipathways.org/instance/WP5366_r134450 http://rdf.wikipathways.org/Pathway/WP5366_r134450/DataNode/eac2b (Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 24

http://classic.wikipathways.org/instance/WP5366_r134450 "cell proliferation, survival, 
growth and differentiation" with graphId a9da5
http://classic.wikipathways.org/instance/WP5366_r134450 "actin stabilization" with graphId e7e47
http://classic.wikipathways.org/instance/WP5366_r134450 "vesicle exocytosis" with graphId aa603
http://classic.wikipathways.org/instance/WP5366_r134450 "recycling of 
endocytosed proteins" with graphId ac39f
http://classic.wikipathways.org/instance/WP5366_r134450 "second messengers in cell growth, 
survival and movement" with graphId c94fb
http://classic.wikipathways.org/instance/WP5366_r134450 "cell cycle progression
G1/S phase" with graphId d3743
http://classic.wikipathways.org/instance/WP5366_r134450 "function unknown" with graphId e9af6
http://classic.wikipathways.org/instance/WP5366_r134450 "stimulates proliferation" with graphId d0ad2
http://classic.wikipathways.org/instance/WP5366_r134450 "restriction of excitatory 
synaps formation in the 
hippocampus" with graphId fcacf
http://classic.wikipathways.org/instance/WP5366_r134450 "dendritic filopodia formation 
and contributing to spinogenesis
(hippocampal nerves)" with graphId d902d
http://classic.wikipathways.org/instance/WP5366_r134450 "replication primer 
formation in mtDNA" with graphId a799a
http://classic.wikipathways.org/instance/WP5366_r134450 "granulocyte differentiation 
and functionality of hematopoietic 
progenitor cells" with graphId f370b
http://classic.wikipathways.org/instance/WP5366_r134450 "axon growth and
regeneration" with graphId dcb1c
http://classic.wikipathways.org/instance/WP5366_r134450 "progression
cell cycle" with graphId d939e
http://classic.wikipathways.org/instance/WP5366_r134450 "restart of stalled 
replication forks " with graphId cb5e7
http://classic.wikipathways.org/instance/WP5366_r134450 "Ribosome formation
and cell growth" with graphId a0110
http://classic.wikipathways.org/instance/WP5366_r134450 "change behavior of
AML cells" with graphId cc6aa
http://classic.wikipathways.org/instance/WP5366_r134450 "transcription of 
mtDNA into RNA " with graphId d7a83
http://classic.wikipathways.org/instance/WP5366_r134450 "Involved in the regulation of dendritic spine 
development, contributing to the regulation 
of dendritic branching and filopodia extension " with graphId f8321
http://classic.wikipathways.org/instance/WP5366_r134450 "calcium influx " with graphId f61a8
http://classic.wikipathways.org/instance/WP5366_r134450 "DNA-damage induced
apoptosis " with graphId ebb46
http://classic.wikipathways.org/instance/WP5366_r134450 "function 
unknown " with graphId a5a8f
http://classic.wikipathways.org/instance/WP5366_r134450 "Ciliogenesis " with graphId bd13b
http://classic.wikipathways.org/instance/WP5366_r134450 "microtubules stabillity" with graphId fda2b

UniProtTests.allP62805

Potentially imprecise UniProt identifier: 1

http://classic.wikipathways.org/instance/WP5366_r134450 Histone H4 P62805 may not be the identifier you intended (P62805 matches 14 different genes), please check;