wikipathways-collection

WikiPathways WP5365

• WikiPathways: WP5365 (classic)
• Species: Homo sapiens
• Scholia: WP5365

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP5365_r134526 http://rdf.wikipathways.org/Pathway/WP5365_r134526/DataNode/d65b2 ()
• http://classic.wikipathways.org/instance/WP5365_r134526 http://rdf.wikipathways.org/Pathway/WP5365_r134526/DataNode/eb5e3 ()

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 11

• http://classic.wikipathways.org/instance/WP5365_r134526 “Stabilization of the kinetochore fibers of the mitotic spindle” with graphId a46f3
• http://classic.wikipathways.org/instance/WP5365_r134526 “Function unknown Possibly involved in neurodevelopment” with graphId da898
• http://classic.wikipathways.org/instance/WP5365_r134526 “Error-prone DNA polymerase that often misincorporates dT regardless of template sequence” with graphId f0079
• http://classic.wikipathways.org/instance/WP5365_r134526 “Function unknown” with graphId cfd13
• http://classic.wikipathways.org/instance/WP5365_r134526 “Protein degradation” with graphId c406c
• http://classic.wikipathways.org/instance/WP5365_r134526 “May play an important role in neural development but details unknown” with graphId a3a05
• http://classic.wikipathways.org/instance/WP5365_r134526 “Function unknown” with graphId fe16c
• http://classic.wikipathways.org/instance/WP5365_r134526 “Plays an essential role in adipogenesis, by regulating expression of genes involved in pre-adipocyte differentiation” with graphId f2cb4
• http://classic.wikipathways.org/instance/WP5365_r134526 “Chondrocyte proliferation, differentiation, and apoptosis” with graphId d7047
• http://classic.wikipathways.org/instance/WP5365_r134526 “RNA polymerase II elongation of transcription” with graphId e6491
• http://classic.wikipathways.org/instance/WP5365_r134526 “Dopamine uptake” with graphId f87a2

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 2

• http://classic.wikipathways.org/instance/WP5365_r134526 http://rdf.wikipathways.org/Pathway/WP5365_r134526/WP/Interaction/id9cafefc4 “proton” (https://identifiers.org/chebi/CHEBI:24636) and proton” (https://identifiers.org/chebi/CHEBI:24636)
• http://classic.wikipathways.org/instance/WP5365_r134526 http://rdf.wikipathways.org/Pathway/WP5365_r134526/WP/Interaction/id54eb07a9 “Ca2+” (https://identifiers.org/chebi/CHEBI:29108) and Ca2+” (https://identifiers.org/chebi/CHEBI:29108)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations