wikipathways-collection

WikiPathways WP5362

• WikiPathways: WP5362 (classic)
• Species: Homo sapiens
• Scholia: WP5362

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 13
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP5362_r134655 PI3K with datasource Pfam
http://classic.wikipathways.org/instance/WP5362_r134655 Interferon Type I (α/β/δ...) with datasource Pfam

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 13

• http://classic.wikipathways.org/instance/WP5362_r134655 “Exon junction complex disassembly in the cytoplasm and translation enhancement of exon junction complex bearing spliced mRNA” with graphId e81f9
• http://classic.wikipathways.org/instance/WP5362_r134655 “Maturation of NK cells” with graphId ee8fe
• http://classic.wikipathways.org/instance/WP5362_r134655 “Tumour cell growth” with graphId c7de5
• http://classic.wikipathways.org/instance/WP5362_r134655 “Formation of proapoptotic isoforms” with graphId c9630
• http://classic.wikipathways.org/instance/WP5362_r134655 “Function unknown” with graphId dadcf
• http://classic.wikipathways.org/instance/WP5362_r134655 “Peroxisome proliferation/division” with graphId b9d15
• http://classic.wikipathways.org/instance/WP5362_r134655 “Required for pre-mRNA as component of the splicosome” with graphId f418a
• http://classic.wikipathways.org/instance/WP5362_r134655 “Probably involved in hydrolysis of nucleoside diphosphate derivatives” with graphId e46c9
• http://classic.wikipathways.org/instance/WP5362_r134655 “Production of anti-microbial proteins and inflammatory cytokines” with graphId ffaea
• http://classic.wikipathways.org/instance/WP5362_r134655 “probably non-functional pseudogene” with graphId c3eaf
• http://classic.wikipathways.org/instance/WP5362_r134655 “Voltage dependent anion channel required for acidification and functions of the Golgi apparatus that may function in counter-ion conductance “ with graphId e4661
• http://classic.wikipathways.org/instance/WP5362_r134655 “Traps exon junction complex onto spliced mRNA” with graphId f20a6
• http://classic.wikipathways.org/instance/WP5362_r134655 “Steroid hormone signalling” with graphId c95c8

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels