wikipathways-collection

WikiPathways WP5353

• WikiPathways: WP5353 (classic)
• Species: Homo sapiens
• Scholia: WP5353

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 12
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 15
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 12

• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/fd66e (Endometrial cancer)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/d8a1f (Gastric cancer)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/d316e (Ligand)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/bc01a (Mesothelioma)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/bf2ef (Pancreatic cancer)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/c2a35 (Prostate cancer)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/b0ac5 (Protein)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/f1702 (Protein)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/b13d5 (Protein/ Gene)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/f296e (Protein/ Gene)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/cdab7 (Receptor)
• http://classic.wikipathways.org/instance/WP5353_r134870 http://rdf.wikipathways.org/Pathway/WP5353_r134870/DataNode/e7e94 (mRNA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 15

http://classic.wikipathways.org/instance/WP5353_r134870 "PI3K" with graphId ee76b
http://classic.wikipathways.org/instance/WP5353_r134870 "NU" with graphId fc30a
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId abf92
http://classic.wikipathways.org/instance/WP5353_r134870 "NU" with graphId c9e86
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId a7b86
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId bb515
http://classic.wikipathways.org/instance/WP5353_r134870 "NU" with graphId f9c74
http://classic.wikipathways.org/instance/WP5353_r134870 "NU" with graphId fca27
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId f2489
http://classic.wikipathways.org/instance/WP5353_r134870 "EC" with graphId c0165
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId df319
http://classic.wikipathways.org/instance/WP5353_r134870 "PI3K" with graphId cf966
http://classic.wikipathways.org/instance/WP5353_r134870 "Superoxide
production" with graphId b01ef
http://classic.wikipathways.org/instance/WP5353_r134870 "NU" with graphId c3185
http://classic.wikipathways.org/instance/WP5353_r134870 "CY" with graphId f6a9c