wikipathways-collection

WikiPathways WP5329

• WikiPathways: WP5329 (classic)
• Species: Homo sapiens
• Scholia: WP5329

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 7
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP5329_r135219 FASN with datasource HGNC Accession number
http://classic.wikipathways.org/instance/WP5329_r135219 FADS1 with datasource HGNC Accession number
http://classic.wikipathways.org/instance/WP5329_r135219 ACSL4 with datasource HGNC Accession number

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Possible MIM translocation

Interactions between identical nodes: 7

• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re22 “Mevalonate-P” (https://identifiers.org/chebi/CHEBI:25350) and Mevalonate-P” (https://identifiers.org/chebi/CHEBI:25350)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re22 “Mevalonate-P” (https://identifiers.org/chebi/CHEBI:25350) and Mevalonate-PP” (https://identifiers.org/chebi/CHEBI:25350)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re22 “Mevalonate-PP” (https://identifiers.org/chebi/CHEBI:25350) and Mevalonate-P” (https://identifiers.org/chebi/CHEBI:25350)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re22 “Mevalonate-PP” (https://identifiers.org/chebi/CHEBI:25350) and Mevalonate-PP” (https://identifiers.org/chebi/CHEBI:25350)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re96 “FADS2” (https://identifiers.org/ensembl/ENSG00000134824) and FADS2” (https://identifiers.org/ensembl/ENSG00000134824)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re97 “SCD” (https://identifiers.org/ensembl/ENSG00000099194) and SCD” (https://identifiers.org/ensembl/ENSG00000099194)
• http://classic.wikipathways.org/instance/WP5329_r135219 http://rdf.wikipathways.org/Pathway/WP5329_r135219/WP/Interaction/re93 “ELOVL4” (https://identifiers.org/ensembl/ENSG00000118402) and ELOVL4” (https://identifiers.org/ensembl/ENSG00000118402)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations