wikipathways-collection

WikiPathways WP5323

• WikiPathways: WP5323 (classic)
• Species: Homo sapiens
• Scholia: WP5323

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 18
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/DataNode/f9b77 (FABP)
• http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/DataNode/sa265 (LP(a))
• http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/DataNode/sa267 (LP(a))
• http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/DataNode/sa114 (Secretion)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 18

http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re82 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re39 "Phospholipids" (https://identifiers.org/chebi/CHEBI:16247) and 
Phospholipids" (https://identifiers.org/chebi/CHEBI:16247)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re39 "Phospholipids" (https://identifiers.org/chebi/CHEBI:16247) and 
Phospholipid" (https://identifiers.org/chebi/CHEBI:16247)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re39 "Phospholipid" (https://identifiers.org/chebi/CHEBI:16247) and 
Phospholipids" (https://identifiers.org/chebi/CHEBI:16247)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re39 "Phospholipid" (https://identifiers.org/chebi/CHEBI:16247) and 
Phospholipid" (https://identifiers.org/chebi/CHEBI:16247)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re83 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re86 "Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002) and 
Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re75 "Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002) and 
Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re63 "Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904) and 
Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re81 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re38 "Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002) and 
Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re97 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re88 "Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002) and 
Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re67 "Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904) and 
Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re64 "Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904) and 
Long-chain fatty acid" (https://identifiers.org/chebi/CHEBI:15904)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re36 "Cholesterol" (https://identifiers.org/chebi/CHEBI:16113) and 
Cholesterol" (https://identifiers.org/chebi/CHEBI:16113)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re85 "Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002) and 
Cholesterol ester" (https://identifiers.org/chebi/CHEBI:17002)
http://classic.wikipathways.org/instance/WP5323_r135704 http://rdf.wikipathways.org/Pathway/WP5323_r135704/WP/Interaction/re40 "Triacylglycerol" (https://identifiers.org/chebi/CHEBI:17855) and 
Triacylglycerol" (https://identifiers.org/chebi/CHEBI:17855)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations