wikipathways-collection

WikiPathways WP5314

• WikiPathways: WP5314 (classic)
• Species: Homo sapiens
• Scholia: WP5314

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 14
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • achiralAminoAcids: .x we found 1 problem(s):
    • Metabolites with ChEBI identifiers of achiral amino acids: 1
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • metaboliteAlsoOtherType: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 119
• Number of assertions: 239
• Number of fails: 2

Fails

Possible MIM translocation

Interactions between identical nodes: 14

• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id5ca97d16 “Glutamate” (https://identifiers.org/chebi/CHEBI:14321) and Glutamate” (https://identifiers.org/chebi/CHEBI:14321)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id39db684d “CO2” (https://identifiers.org/chebi/CHEBI:16526) and CO2” (https://identifiers.org/chebi/CHEBI:16526)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/idfbad38df “Glutamate” (https://identifiers.org/chebi/CHEBI:14321) and Glutamate” (https://identifiers.org/chebi/CHEBI:14321)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/idcb738b48 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id5affd5c7 “Na+” (https://identifiers.org/chebi/CHEBI:29101) and Na+” (https://identifiers.org/chebi/CHEBI:29101)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id24d75b25 “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/ida4c7d417 “Lactate” (https://identifiers.org/chebi/CHEBI:24996) and Lactate” (https://identifiers.org/chebi/CHEBI:24996)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id1f5335c9 “H+” (https://identifiers.org/chebi/CHEBI:15378) and H+” (https://identifiers.org/chebi/CHEBI:15378)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id53b50a6e “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/idc7ef6d7b “HCO3-“ (https://identifiers.org/chebi/CHEBI:17544) and HCO3-“ (https://identifiers.org/chebi/CHEBI:17544)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id4c1ca33 “Glucose” (https://identifiers.org/chebi/CHEBI:17234) and Glucose” (https://identifiers.org/chebi/CHEBI:17234)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/a2827 “K+” (https://identifiers.org/chebi/CHEBI:29103) and K+” (https://identifiers.org/chebi/CHEBI:29103)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/id8e38f6e7 “CO2” (https://identifiers.org/chebi/CHEBI:16526) and CO2” (https://identifiers.org/chebi/CHEBI:16526)
• http://classic.wikipathways.org/instance/WP5314_r136716 http://rdf.wikipathways.org/Pathway/WP5314_r136716/WP/Interaction/ide8e3e04f “Glutamine” (https://identifiers.org/chebi/CHEBI:28300) and Glutamine” (https://identifiers.org/chebi/CHEBI:28300)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

MetabolitesTests.achiralAminoAcids

Metabolites with ChEBI identifiers of achiral amino acids: 1

http://classic.wikipathways.org/instance/WP5314_r136716 Glutamine CHEBI:28300