wikipathways-collection

WikiPathways WP5313

• WikiPathways: WP5313 (classic)
• Species: Homo sapiens
• Scholia: WP5313

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/dc901 (ATPase)
• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/b9a8f (CN1)
• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/fbb72 (CN2)
• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/e7056 (Carnosine degradation )
• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/ff44e (SLC1A2/GLT-1)
• http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/DataNode/cb510 (SLC7A5)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/WP/Interaction/id8963773d "K+" (https://identifiers.org/chebi/CHEBI:29103) and 
K+" (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/WP/Interaction/ide29f66b7 "Na+" (https://identifiers.org/chebi/CHEBI:29101) and 
Na+" (https://identifiers.org/chebi/CHEBI:29101)
http://classic.wikipathways.org/instance/WP5313_r127653 http://rdf.wikipathways.org/Pathway/WP5313_r127653/WP/Interaction/id342b537 "Na+" (https://identifiers.org/chebi/CHEBI:29101) and 
Na+" (https://identifiers.org/chebi/CHEBI:29101)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations