wikipathways-collection

WikiPathways WP5296

• WikiPathways: WP5296 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 22
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/bb0cc (CoA(16:1))
• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/b0450 (CoA(18:1))
• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/d52a0 (CoA(18:1))
• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/dfff4 (CoA(20:1))
• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/dd029 (CoA(20:4))
• http://classic.wikipathways.org/instance/WP5296_r124404 http://rdf.wikipathways.org/Pathway/WP5296_r124404/DataNode/ee89a (LCL)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 22

http://classic.wikipathways.org/instance/WP5296_r124404 Dgat1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Ptdss1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pnpla2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 PPap2a with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Ptdss2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pcyt1a with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pld1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pcyt2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pla2g1b with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Agpat4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Etnk1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Dgat2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pisd with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Cdipt with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Cds1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Chpt1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Gpam with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Agpat6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Chkb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Dgkz with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Crls1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP5296_r124404 Pemt with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping