wikipathways-collection

WikiPathways WP5283

• WikiPathways: WP5283 (classic)
• Species: Homo sapiens
• Scholia: WP5283

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/e978f (BDNFR)
• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/d914b (Ion imbalance)
• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/f7db7 (NRS)
• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/bc233 (PKC)
• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/ddd0b (Protein kinases)
• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/b04ba (Sensitization and hyperexcitation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 1

• http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/DataNode/d914b (Ion imbalance)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/id923301e0 "Na+" (https://identifiers.org/wikidata/Q31541104) and 
Na+" (https://identifiers.org/wikidata/Q31541104)
http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/id6330e88e "K+" (https://identifiers.org/chebi/CHEBI:29103) and 
K+" (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/id6f50d99c "K+" (https://identifiers.org/chebi/CHEBI:29103) and 
K+" (https://identifiers.org/chebi/CHEBI:29103)
http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/e9e3a "Glucose" (https://identifiers.org/wikidata/Q37525) and 
Glucose" (https://identifiers.org/wikidata/Q37525)
http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/idcc5067f9 "O2- radical" (https://identifiers.org/chebi/CHEBI:61073) and 
O2- radical" (https://identifiers.org/chebi/CHEBI:61073)
http://classic.wikipathways.org/instance/WP5283_r128336 http://rdf.wikipathways.org/Pathway/WP5283_r128336/WP/Interaction/f06d5 "Glucose" (https://identifiers.org/wikidata/Q37525) and 
Glucose" (https://identifiers.org/wikidata/Q37525)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations