wikipathways-collection

WikiPathways WP5236

• WikiPathways: WP5236 (classic)
• Species: Homo sapiens
• Scholia: WP5236

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 39
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP5236_r135957 http://rdf.wikipathways.org/Pathway/WP5236_r135957/DataNode/fe723 (LIV2?)
• http://classic.wikipathways.org/instance/WP5236_r135957 http://rdf.wikipathways.org/Pathway/WP5236_r135957/DataNode/d87e1 (NOTCH2?)
• http://classic.wikipathways.org/instance/WP5236_r135957 http://rdf.wikipathways.org/Pathway/WP5236_r135957/DataNode/bdb7c (WNT?)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 39

http://classic.wikipathways.org/instance/WP5236_r135957 "visceral 
epithelial cells
(podocytes)" with graphId f918c
http://classic.wikipathways.org/instance/WP5236_r135957 "visceral 
epithelial cells
(podocytes)" with graphId c88d3
http://classic.wikipathways.org/instance/WP5236_r135957 "intermediate
mesoderm" with graphId b83d6
http://classic.wikipathways.org/instance/WP5236_r135957 "Metanephric
mesenchyme" with graphId a1d75
http://classic.wikipathways.org/instance/WP5236_r135957 "proximal" with graphId e827a
http://classic.wikipathways.org/instance/WP5236_r135957 "parietal
epithelial cells
(Bowman's capsule)" with graphId e14a1
http://classic.wikipathways.org/instance/WP5236_r135957 "mesenchyme
around aorta" with graphId ed07e
http://classic.wikipathways.org/instance/WP5236_r135957 "Blood vessels" with graphId ea3e7
http://classic.wikipathways.org/instance/WP5236_r135957 "paraxial
mesoderm" with graphId dd4de
http://classic.wikipathways.org/instance/WP5236_r135957 "stromal
progenitors" with graphId dff7d
http://classic.wikipathways.org/instance/WP5236_r135957 "stromal
progenitors
within kidney" with graphId ce3f1
http://classic.wikipathways.org/instance/WP5236_r135957 "integration 
into kidney" with graphId fdefc
http://classic.wikipathways.org/instance/WP5236_r135957 "Ureter
mesenchyme" with graphId be598
http://classic.wikipathways.org/instance/WP5236_r135957 "PeriWolffian
mesenchyme" with graphId a1e80
http://classic.wikipathways.org/instance/WP5236_r135957 "Ureter
smooth muscle" with graphId b825f
http://classic.wikipathways.org/instance/WP5236_r135957 "Peripheral stroma" with graphId a9280
http://classic.wikipathways.org/instance/WP5236_r135957 "distal" with graphId ce10b
http://classic.wikipathways.org/instance/WP5236_r135957 "distal" with graphId c3aa3
http://classic.wikipathways.org/instance/WP5236_r135957 "Primed
NPC" with graphId c64d9
http://classic.wikipathways.org/instance/WP5236_r135957 "Pretubular
aggregate" with graphId fa8cf
http://classic.wikipathways.org/instance/WP5236_r135957 "distal segment" with graphId fef78
http://classic.wikipathways.org/instance/WP5236_r135957 "proximal" with graphId a61fa
http://classic.wikipathways.org/instance/WP5236_r135957 "Henle's loop" with graphId bf28c
http://classic.wikipathways.org/instance/WP5236_r135957 "parietal
epithelial cells
(Bowman's capsule)" with graphId c574c
http://classic.wikipathways.org/instance/WP5236_r135957 "intermediate" with graphId f8f61
http://classic.wikipathways.org/instance/WP5236_r135957 "Angioblasts" with graphId aadaa
http://classic.wikipathways.org/instance/WP5236_r135957 "Cortical stroma" with graphId dff52
http://classic.wikipathways.org/instance/WP5236_r135957 "Ground state
NPC" with graphId b2b8f
http://classic.wikipathways.org/instance/WP5236_r135957 "distal" with graphId d1fc1
http://classic.wikipathways.org/instance/WP5236_r135957 "NPC" with graphId bed35
http://classic.wikipathways.org/instance/WP5236_r135957 "proximal" with graphId fd21c
http://classic.wikipathways.org/instance/WP5236_r135957 "lateral
mesoderm" with graphId e49c0
http://classic.wikipathways.org/instance/WP5236_r135957 "pericytes" with graphId f6b16
http://classic.wikipathways.org/instance/WP5236_r135957 "Vascular progenitors
within kidney" with graphId e1405
http://classic.wikipathways.org/instance/WP5236_r135957 "proximal segment" with graphId b74fd
http://classic.wikipathways.org/instance/WP5236_r135957 "Medullary stroma" with graphId d06fa
http://classic.wikipathways.org/instance/WP5236_r135957 "Renin positive cell" with graphId e83c1
http://classic.wikipathways.org/instance/WP5236_r135957 "EPOproducing
cells" with graphId a45b0
http://classic.wikipathways.org/instance/WP5236_r135957 "Renal capsule" with graphId c7421