wikipathways-collection

WikiPathways WP5236

• WikiPathways: WP5236 (classic)
• Species: Homo sapiens
• Scholia: WP5236

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .x we found 1 problem(s):
    • Entrez Gene identifiers that are not numbers: 1
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 39
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 3

Fails

NCBI Gene identifier is not an integer

Entrez Gene identifiers that are not numbers: 1

http://classic.wikipathways.org/instance/WP5236_r136214 -> NOTCH2?, WP5236

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/entrezGeneIdentifiersNotNumber

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP5236_r136214 NOTCH2? with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping

Interactions with Labels

Interactions found that involve Labels: 39

• http://classic.wikipathways.org/instance/WP5236_r136214 “Pretubular aggregate” with graphId fa8cf
• http://classic.wikipathways.org/instance/WP5236_r136214 “Primed NPC” with graphId c64d9
• http://classic.wikipathways.org/instance/WP5236_r136214 “distal” with graphId c3aa3
• http://classic.wikipathways.org/instance/WP5236_r136214 “stromal progenitors” with graphId dff7d
• http://classic.wikipathways.org/instance/WP5236_r136214 “intermediate mesoderm” with graphId b83d6
• http://classic.wikipathways.org/instance/WP5236_r136214 “proximal” with graphId fd21c
• http://classic.wikipathways.org/instance/WP5236_r136214 “proximal” with graphId a61fa
• http://classic.wikipathways.org/instance/WP5236_r136214 “distal” with graphId ce10b
• http://classic.wikipathways.org/instance/WP5236_r136214 “intermediate” with graphId f8f61
• http://classic.wikipathways.org/instance/WP5236_r136214 “PeriWolffian mesenchyme” with graphId a1e80
• http://classic.wikipathways.org/instance/WP5236_r136214 “mesenchyme around aorta” with graphId ed07e
• http://classic.wikipathways.org/instance/WP5236_r136214 “lateral mesoderm” with graphId e49c0
• http://classic.wikipathways.org/instance/WP5236_r136214 “Vascular progenitors within kidney” with graphId e1405
• http://classic.wikipathways.org/instance/WP5236_r136214 “distal segment” with graphId fef78
• http://classic.wikipathways.org/instance/WP5236_r136214 “distal” with graphId d1fc1
• http://classic.wikipathways.org/instance/WP5236_r136214 “Peripheral stroma” with graphId a9280
• http://classic.wikipathways.org/instance/WP5236_r136214 “Renal capsule” with graphId c7421
• http://classic.wikipathways.org/instance/WP5236_r136214 “Blood vessels” with graphId ea3e7
• http://classic.wikipathways.org/instance/WP5236_r136214 “Angioblasts” with graphId aadaa
• http://classic.wikipathways.org/instance/WP5236_r136214 “Medullary stroma” with graphId d06fa
• http://classic.wikipathways.org/instance/WP5236_r136214 “EPOproducing cells” with graphId a45b0
• http://classic.wikipathways.org/instance/WP5236_r136214 “stromal progenitors within kidney” with graphId ce3f1
• http://classic.wikipathways.org/instance/WP5236_r136214 “Ureter mesenchyme” with graphId be598
• http://classic.wikipathways.org/instance/WP5236_r136214 “Henle’s loop” with graphId bf28c
• http://classic.wikipathways.org/instance/WP5236_r136214 “proximal segment” with graphId b74fd
• http://classic.wikipathways.org/instance/WP5236_r136214 “visceral epithelial cells (podocytes)” with graphId c88d3
• http://classic.wikipathways.org/instance/WP5236_r136214 “proximal” with graphId e827a
• http://classic.wikipathways.org/instance/WP5236_r136214 “Ureter smooth muscle” with graphId b825f
• http://classic.wikipathways.org/instance/WP5236_r136214 “Ground state NPC” with graphId b2b8f
• http://classic.wikipathways.org/instance/WP5236_r136214 “Metanephric mesenchyme” with graphId a1d75
• http://classic.wikipathways.org/instance/WP5236_r136214 “Renin positive cell” with graphId e83c1
• http://classic.wikipathways.org/instance/WP5236_r136214 “Cortical stroma” with graphId dff52
• http://classic.wikipathways.org/instance/WP5236_r136214 “pericytes” with graphId f6b16
• http://classic.wikipathways.org/instance/WP5236_r136214 “visceral epithelial cells (podocytes)” with graphId f918c
• http://classic.wikipathways.org/instance/WP5236_r136214 “parietal epithelial cells (Bowman’s capsule)” with graphId e14a1
• http://classic.wikipathways.org/instance/WP5236_r136214 “integration into kidney” with graphId fdefc
• http://classic.wikipathways.org/instance/WP5236_r136214 “NPC” with graphId bed35
• http://classic.wikipathways.org/instance/WP5236_r136214 “parietal epithelial cells (Bowman’s capsule)” with graphId c574c
• http://classic.wikipathways.org/instance/WP5236_r136214 “paraxial mesoderm” with graphId dd4de

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels