wikipathways-collection

WikiPathways WP5187

• WikiPathways: WP5187 (classic)
• Species: Homo sapiens
• Scholia: WP5187

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 13
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 4
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 13

• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/da7f5 (Cellular immunity)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f16d0 (Humoral immunity)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/ea79d (IFN-1 receptor)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/ea93a (IFN-1 receptor)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/fbdb3 (ISRE)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f1fb1 (Proinflammatory cytokine genes)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f7119 (Proinflammatory cytokines)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/b3bb9 (SARS-CoV 2 mRNA)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/d588f (SARS-CoV 2 mRNA)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f65c2 (SARS-CoV 2 mRNA)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/c872f (Type 1 IFNs)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/ceb2c (Type 1 IFNs)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/d56da (Type 1 IFNs)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 4

• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/da7f5 (Cellular immunity)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f16d0 (Humoral immunity)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/fbdb3 (ISRE)
• http://classic.wikipathways.org/instance/WP5187_r129216 http://rdf.wikipathways.org/Pathway/WP5187_r129216/DataNode/f1fb1 (Proinflammatory cytokine genes)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5187_r129216 "Lipid coat" with graphId bd901