wikipathways-collection

WikiPathways WP5180

• WikiPathways: WP5180 (classic)
• Species: Homo sapiens
• Scholia: WP5180

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 6
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/DataNode/c887b (E2F)
• http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/DataNode/ba605 (E2F )
• http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/DataNode/d9432 (Hedgehog signaling pathway)
• http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/DataNode/b4027 (Notch Intracellular Domain (NICD))
• http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/DataNode/ef6ea (Salvador-Warts-Hippo Signalling Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 6

http://classic.wikipathways.org/instance/WP5180_r134649 "(Neuronal) cell differentiation" with graphId f558e
http://classic.wikipathways.org/instance/WP5180_r134649 " Loss of axonal transport and 
promotion of tau self-aggregation and fibrillisation" with graphId dd1ae
http://classic.wikipathways.org/instance/WP5180_r134649 "Aβ42 and Aβ40 peptides 
form interlaced amyloid fibrils" with graphId e179d
http://classic.wikipathways.org/instance/WP5180_r134649 "NFAT translocation back to the cytosol,
inhibiting NFAT-dependent transcription" with graphId ab74a
http://classic.wikipathways.org/instance/WP5180_r134649 "Co-localization of CASP9 to the nucleus;
inhibiting apopotic pathway" with graphId ce79c
http://classic.wikipathways.org/instance/WP5180_r134649 "Cell survival" with graphId e9aa3

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP5180_r134649 http://rdf.wikipathways.org/Pathway/WP5180_r134649/WP/Interaction/a6277 "H3-3A" (https://identifiers.org/ensembl/ENSG00000163041) and 
H3-3A" (https://identifiers.org/ensembl/ENSG00000163041)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations