wikipathways-collection

WikiPathways WP5176

• WikiPathways: WP5176 (classic)
• Species: Homo sapiens
• Scholia: WP5176

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 23
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 18
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/DataNode/a89f4 (Bilirubin disposal)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 23

http://classic.wikipathways.org/instance/WP5176_r128232 "Congenital bile acid synthesis defect 6" with graphId b5ee6
http://classic.wikipathways.org/instance/WP5176_r128232 "Bile acid-CoA ligase deficiency" with graphId c0ad7
http://classic.wikipathways.org/instance/WP5176_r128232 "D-bifunctional protein deficiency" with graphId aa859
http://classic.wikipathways.org/instance/WP5176_r128232 "5β-Reductase deficiency" with graphId bbeac
http://classic.wikipathways.org/instance/WP5176_r128232 "Bile acid amidation defect" with graphId b9802
http://classic.wikipathways.org/instance/WP5176_r128232 "Bile acid-CoA
ligase deficiency" with graphId d0e4e
http://classic.wikipathways.org/instance/WP5176_r128232 "OATP1B3 disease" with graphId a0972
http://classic.wikipathways.org/instance/WP5176_r128232 "Sterol 27-hydroxylase deficiency" with graphId dd5ab
http://classic.wikipathways.org/instance/WP5176_r128232 "Spastic Paraplegia 5A" with graphId e61d9
http://classic.wikipathways.org/instance/WP5176_r128232 "Sterol carrier protein 2 deficiency " with graphId d3833
http://classic.wikipathways.org/instance/WP5176_r128232 "Sterol 27-hydroxylase deficiency" with graphId a7126
http://classic.wikipathways.org/instance/WP5176_r128232 "ABCC2 deficiency" with graphId cc569
http://classic.wikipathways.org/instance/WP5176_r128232 "Congenital bile
acid synthesis
defect type 5" with graphId ab185
http://classic.wikipathways.org/instance/WP5176_r128232 "Cholesterol 7α-hydroxylase deficiency" with graphId a293f
http://classic.wikipathways.org/instance/WP5176_r128232 "ABCB4 deficiency" with graphId aee45
http://classic.wikipathways.org/instance/WP5176_r128232 "5β-Reductase deficiency" with graphId c9359
http://classic.wikipathways.org/instance/WP5176_r128232 "OATP1B1 disease" with graphId ce805
http://classic.wikipathways.org/instance/WP5176_r128232 "AMACR deficiency" with graphId c5b2c
http://classic.wikipathways.org/instance/WP5176_r128232 "Bile acid amidation defect" with graphId c5d24
http://classic.wikipathways.org/instance/WP5176_r128232 "3β-Dehydrogenase deficiency" with graphId b0872
http://classic.wikipathways.org/instance/WP5176_r128232 "3β-Dehydrogenase 
deficiency" with graphId bbe71
http://classic.wikipathways.org/instance/WP5176_r128232 "ATP8B1 deficiency" with graphId d7f7d
http://classic.wikipathways.org/instance/WP5176_r128232 "ABCB11 deficiency" with graphId ea3c9

Possible MIM translocation

Interactions between identical nodes: 18

http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idbbfdd88e "Bile acid" (https://identifiers.org/chebi/CHEBI:36277) and 
Bile acid" (https://identifiers.org/chebi/CHEBI:36277)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/fa787 "Bilirubin glucuronide" (https://identifiers.org/chebi/CHEBI:16427) and 
Bilirubin glucuronide" (https://identifiers.org/chebi/CHEBI:16427)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id57a6c794 "phosphatidylcholines" (https://identifiers.org/chebi/CHEBI:49183) and 
phosphatidylcholines" (https://identifiers.org/chebi/CHEBI:49183)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idf77f787f "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idf77f787f "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idf77f787f "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idf77f787f "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/c0013 "glycocholate" (https://identifiers.org/chebi/CHEBI:29746) and 
glycocholate" (https://identifiers.org/chebi/CHEBI:29746)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id8dde6d9e "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id8dde6d9e "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id8dde6d9e "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id8dde6d9e "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idc7133ada "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idc7133ada "taurocholate" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idc7133ada "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
taurocholate" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idc7133ada "Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257) and 
Taurocholic acid" (https://identifiers.org/chebi/CHEBI:36257)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/id5146a5f2 "Phosphatidylserine" (https://identifiers.org/chebi/CHEBI:18303) and 
Phosphatidylserine" (https://identifiers.org/chebi/CHEBI:18303)
http://classic.wikipathways.org/instance/WP5176_r128232 http://rdf.wikipathways.org/Pathway/WP5176_r128232/WP/Interaction/idf6fc40c0 "glycocholate" (https://identifiers.org/chebi/CHEBI:29746) and 
glycocholate" (https://identifiers.org/chebi/CHEBI:29746)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations