wikipathways-collection

WikiPathways WP5172

• WikiPathways: WP5172 (classic)
• Species: Homo sapiens
• Scholia: WP5172

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 24
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 6
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 24

http://classic.wikipathways.org/instance/WP5172_r128276 "Hereditary
hemochromatosis
(type 1)" with graphId b2423
http://classic.wikipathways.org/instance/WP5172_r128276 "Anemia,
hypochromic microcytic,
with iron overload 1" with graphId bb0a4
http://classic.wikipathways.org/instance/WP5172_r128276 "Cerebellar ataxia" with graphId be9cb
http://classic.wikipathways.org/instance/WP5172_r128276 "Hereditary
hemochromatosis
(type 3)" with graphId b446a
http://classic.wikipathways.org/instance/WP5172_r128276 "Neonatal
hemochromatosis" with graphId f1227
http://classic.wikipathways.org/instance/WP5172_r128276 "?" with graphId ac98e
http://classic.wikipathways.org/instance/WP5172_r128276 "Anemia,
hypochromic microcytic,
with iron overload 2" with graphId e69fa
http://classic.wikipathways.org/instance/WP5172_r128276 "Systemic hemosiderosis,
due to aceruloplasminemia" with graphId a4139
http://classic.wikipathways.org/instance/WP5172_r128276 "Hereditary
hemochromatosis
(type 2a)" with graphId ffcca
http://classic.wikipathways.org/instance/WP5172_r128276 "Mitochondrial
complex III deficiency,
nuclear type 10" with graphId e3150
http://classic.wikipathways.org/instance/WP5172_r128276 "Neurodegeneration
with brain iron
accumulation 3" with graphId ec987
http://classic.wikipathways.org/instance/WP5172_r128276 "Hemochromatosis
type 4" with graphId cada7
http://classic.wikipathways.org/instance/WP5172_r128276 "Low pH" with graphId dc443
http://classic.wikipathways.org/instance/WP5172_r128276 "Hemochromatosis
type 5" with graphId c8fe6
http://classic.wikipathways.org/instance/WP5172_r128276 "Neurodegeneration with 
brain iron
accumulation 1 " with graphId ffa33
http://classic.wikipathways.org/instance/WP5172_r128276 "GRACILE
syndrome" with graphId a716d
http://classic.wikipathways.org/instance/WP5172_r128276 "L-ferritin
deficiency" with graphId cee98
http://classic.wikipathways.org/instance/WP5172_r128276 "Immunodeficiency
46" with graphId e704d
http://classic.wikipathways.org/instance/WP5172_r128276 "Hyperferritinemia
-cataract syndrome " with graphId c5174
http://classic.wikipathways.org/instance/WP5172_r128276 "Pulmonary
hemosiderosis" with graphId c3b52
http://classic.wikipathways.org/instance/WP5172_r128276 "?" with graphId c8107
http://classic.wikipathways.org/instance/WP5172_r128276 "Hereditary
hemochromatosis
(type 2b)" with graphId e04da
http://classic.wikipathways.org/instance/WP5172_r128276 "Hereditary
hypoceruloplasminemia" with graphId cfd56
http://classic.wikipathways.org/instance/WP5172_r128276 "Atransferrinemia" with graphId b4f3a

Possible MIM translocation

Interactions between identical nodes: 6

http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/idb176a9fd "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/id8ccd1e4a "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/id446bf858 "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/id500fa3b "SLC40A1" (https://identifiers.org/ensembl/ENSG00000138449) and 
SLC40A1" (https://identifiers.org/ensembl/ENSG00000138449)
http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/id4091ab31 "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)
http://classic.wikipathways.org/instance/WP5172_r128276 http://rdf.wikipathways.org/Pathway/WP5172_r128276/WP/Interaction/id48094f4a "Fe2+" (https://identifiers.org/chebi/CHEBI:29033) and 
Fe2+" (https://identifiers.org/chebi/CHEBI:29033)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations