wikipathways-collection

WikiPathways WP5158

• WikiPathways: WP5158 (classic)
• Species: Homo sapiens
• Scholia: WP5158

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 14
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 14

• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/1541525668 (CAT)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/a3353 (CREB)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/c4010 (CREB)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/a274b (GANQ)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/d2451 (IFN-γ )
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/d1ab9 (IL1β )
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/faa4c (IL1β )
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/800088638 (NPPA)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/cfd79 (PLC)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/fd160 (Protein)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/1236444285 (SOD2)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/fc3bc (TF)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/aed9c (TNF-alpha)
• http://classic.wikipathways.org/instance/WP5158_r129675 http://rdf.wikipathways.org/Pathway/WP5158_r129675/DataNode/f1957 (TNF-alpha)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 4

http://classic.wikipathways.org/instance/WP5158_r129675 "2" with graphId d7468
http://classic.wikipathways.org/instance/WP5158_r129675 "Myocardial damage in 
atherosclerotic rats" with graphId d31cd
http://classic.wikipathways.org/instance/WP5158_r129675 "NADPH" with graphId a18a0
http://classic.wikipathways.org/instance/WP5158_r129675 "NADPH" with graphId dec36

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP5158_r129675 ‘Urotensin-II-mediated signaling’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference