wikipathways-collection

WikiPathways WP5104

• WikiPathways: WP5104 (classic)
• Species: Homo sapiens
• Scholia: WP5104

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 3
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 5
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 18
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Datanodes of unknown type

The following DataNodes have Unknown @Type: 3

• http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/DataNode/cdde8 (Autoimmune disease)
• http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/DataNode/ed628 (Barraquer-Simons syndrome)
• http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/DataNode/c7ca1 (Membranoproliferative glomerulonephritis)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 5

http://classic.wikipathways.org/instance/WP5104_r128462 "Hydrolysis" with graphId ef858
http://classic.wikipathways.org/instance/WP5104_r128462 "DNA replication
RNA transcription
Cell cycle regulation
Mechanical support
etc." with graphId e99b5
http://classic.wikipathways.org/instance/WP5104_r128462 "Nuclear lamina" with graphId f56d5
http://classic.wikipathways.org/instance/WP5104_r128462 "Adipocyte lysis" with graphId c2596
http://classic.wikipathways.org/instance/WP5104_r128462 "Excess amount of 
membrane attack complex" with graphId f07fd

Possible MIM translocation

Interactions between identical nodes: 18

http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/c9f4a "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3b" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3b" (https://identifiers.org/ensembl/ENSG00000125730)
http://classic.wikipathways.org/instance/WP5104_r128462 http://rdf.wikipathways.org/Pathway/WP5104_r128462/WP/Interaction/id33f792da "C3a" (https://identifiers.org/ensembl/ENSG00000125730) and 
C3a" (https://identifiers.org/ensembl/ENSG00000125730)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations