wikipathways-collection

WikiPathways WP5102

• WikiPathways: WP5102 (classic)
• Species: Homo sapiens
• Scholia: WP5102

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 7
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • achiralAminoAcids: .x we found 1 problem(s):
    • Metabolites with ChEBI identifiers of achiral amino acids: 1
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • metaboliteAlsoOtherType: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 119
• Number of assertions: 239
• Number of fails: 2

Fails

Datanodes of unknown type

The following DataNodes have Unknown @Type: 7

• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/c0bba (FPLD type 1)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/edcf7 (FPLD type 2)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/c75fa (FPLD type 3)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/c5b3c (FPLD type 4)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/dacb2 (FPLD type 5)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/f198a (FPLD type 6)
• http://classic.wikipathways.org/instance/WP5102_r123632 http://rdf.wikipathways.org/Pathway/WP5102_r123632/DataNode/f2b99 (Familial Parital Lipodystrophy (FPLD))

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

MetabolitesTests.achiralAminoAcids

Metabolites with ChEBI identifiers of achiral amino acids: 1

http://classic.wikipathways.org/instance/WP5102_r123632 CAAX CHEBI:15356