wikipathways-collection

WikiPathways WP5085

• WikiPathways: WP5085 (classic)
• Species: Homo sapiens
• Scholia: WP5085

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 2
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Interactions with Labels

Interactions found that involve Labels: 3

• http://classic.wikipathways.org/instance/WP5085_r134585 “Degradation” with graphId dd7a1
• http://classic.wikipathways.org/instance/WP5085_r134585 “DNA” with graphId affb3
• http://classic.wikipathways.org/instance/WP5085_r134585 “F-actin depolymerization” with graphId a90b2

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Possible MIM translocation

Interactions between identical nodes: 2

• http://classic.wikipathways.org/instance/WP5085_r134585 http://rdf.wikipathways.org/Pathway/WP5085_r134585/WP/Interaction/ida6868e0f “Water” (https://identifiers.org/hmdb/HMDB0002111) and Water” (https://identifiers.org/hmdb/HMDB0002111)
• http://classic.wikipathways.org/instance/WP5085_r134585 http://rdf.wikipathways.org/Pathway/WP5085_r134585/WP/Interaction/idf546a3b9 “Water” (https://identifiers.org/hmdb/HMDB0002111) and Water” (https://identifiers.org/hmdb/HMDB0002111)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations