wikipathways-collection

WikiPathways WP5043

• WikiPathways: WP5043 (classic)
• Species: Homo sapiens
• Scholia: WP5043

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 4
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 4

• http://classic.wikipathways.org/instance/WP5043_r134360 http://rdf.wikipathways.org/Pathway/WP5043_r134360/DataNode/fb3ea (2-deoxy-D-ribose-5-phosphate)
• http://classic.wikipathways.org/instance/WP5043_r134360 http://rdf.wikipathways.org/Pathway/WP5043_r134360/DataNode/df432 (5-phospho-D-ribose-1-pyrophosphoric acid)
• http://classic.wikipathways.org/instance/WP5043_r134360 http://rdf.wikipathways.org/Pathway/WP5043_r134360/DataNode/ae854 (PE-Induced Senescence)
• http://classic.wikipathways.org/instance/WP5043_r134360 http://rdf.wikipathways.org/Pathway/WP5043_r134360/DataNode/e8f08 (Phosphoglucomutase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 1

http://classic.wikipathways.org/instance/WP5043_r134360 "Lower levels of the NADP+/NADPH ratio
upregulate the regenartion of NADPH." with graphId b62ec

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP5043_r134360 http://rdf.wikipathways.org/Pathway/WP5043_r134360/WP/Interaction/id1ff4c60c "D-Fructose-6-Phosphate" (https://identifiers.org/wikidata/Q27096303) and 
D-Fructose-6-Phosphate" (https://identifiers.org/wikidata/Q27096303)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations