wikipathways-collection

WikiPathways WP5029

• WikiPathways: WP5029 (classic)
• Species: Homo sapiens
• Scholia: WP5029

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • achiralAminoAcids: .x we found 1 problem(s):
    • Metabolites with ChEBI identifiers of achiral amino acids: 17
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • metaboliteAlsoOtherType: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 119
• Number of assertions: 239
• Number of fails: 2

Fails

Interactions with Labels

Interactions found that involve Labels: 4

• http://classic.wikipathways.org/instance/WP5029_r128556 “Basic AA” with graphId c820b
• http://classic.wikipathways.org/instance/WP5029_r128556 “Basic AA” with graphId caff5
• http://classic.wikipathways.org/instance/WP5029_r128556 “Neutral AA” with graphId c2e4b
• http://classic.wikipathways.org/instance/WP5029_r128556 “Neutral AA” with graphId ade1d

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

MetabolitesTests.achiralAminoAcids

Metabolites with ChEBI identifiers of achiral amino acids: 17

http://classic.wikipathways.org/instance/WP5029_r128556 Alanine CHEBI:16449
http://classic.wikipathways.org/instance/WP5029_r128556 Arginine CHEBI:29016
http://classic.wikipathways.org/instance/WP5029_r128556 Asparagine CHEBI:22653
http://classic.wikipathways.org/instance/WP5029_r128556 Cysteine CHEBI:15356
http://classic.wikipathways.org/instance/WP5029_r128556 Glutamine CHEBI:28300
http://classic.wikipathways.org/instance/WP5029_r128556 Histidine CHEBI:27570
http://classic.wikipathways.org/instance/WP5029_r128556 Isoleucine CHEBI:24898
http://classic.wikipathways.org/instance/WP5029_r128556 Leucine CHEBI:25017
http://classic.wikipathways.org/instance/WP5029_r128556 Lysine CHEBI:25094
http://classic.wikipathways.org/instance/WP5029_r128556 Methionine CHEBI:16811
http://classic.wikipathways.org/instance/WP5029_r128556 Phenylalanine CHEBI:28044
http://classic.wikipathways.org/instance/WP5029_r128556 Proline CHEBI:26271
http://classic.wikipathways.org/instance/WP5029_r128556 Serine CHEBI:17822
http://classic.wikipathways.org/instance/WP5029_r128556 Threonine CHEBI:26986
http://classic.wikipathways.org/instance/WP5029_r128556 Tryptophan CHEBI:27897
http://classic.wikipathways.org/instance/WP5029_r128556 Tyrosine CHEBI:18186
http://classic.wikipathways.org/instance/WP5029_r128556 Valine CHEBI:27266