wikipathways-collection
WikiPathways WP4942
- WikiPathways: WP4942 (classic)
- Species: Homo sapiens
- Scholia: WP4942
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests
- entrezGeneIdentifiersNotNumber: .. all OK!
- affyProbeIdentifiersNotCorrect: .. all OK!
- outdatedIdentifiers: …. all OK!
- nonNumericHGNCAccessionNumbers: .. all OK!
- genesWithoutEnsemblMapping: .x we found 1 problem(s):
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 118
- Number of assertions: 237
- Number of fails: 2
Fails
Genes with identifier but no Ensembl identifier mapping
The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
http://classic.wikipathways.org/instance/WP4942_r134608 ADP/ATP translocases with datasource Pfam
More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping
Interactions with Labels
Interactions found that involve Labels: 11
- http://classic.wikipathways.org/instance/WP4942_r134608 “tumor growth” with graphId e15a3
- http://classic.wikipathways.org/instance/WP4942_r134608 “recruitment and stimulation of leukocytes and NKs” with graphId bf5e6
- http://classic.wikipathways.org/instance/WP4942_r134608 “exact function unclear possibly involved in golgi apparatus organization stacking of cristae” with graphId d97fb
- http://classic.wikipathways.org/instance/WP4942_r134608 “exact function unclear possibly involved in golgi apparatus organization stacking of cristae” with graphId eacad
- http://classic.wikipathways.org/instance/WP4942_r134608 “increased Ca2+ flux upon stimulation” with graphId b6d27
- http://classic.wikipathways.org/instance/WP4942_r134608 “dendritic growth neuronal development ASD risk gene” with graphId e85b1
- http://classic.wikipathways.org/instance/WP4942_r134608 “unclear function” with graphId c520d
- http://classic.wikipathways.org/instance/WP4942_r134608 “light” with graphId c7b69
- http://classic.wikipathways.org/instance/WP4942_r134608 “Function unclear Inactive phosphatidyl- inositol 3-phosphatase 10 Source: https://www.uniprot.org/uniprot/Q9NXD2” with graphId f87a0
- http://classic.wikipathways.org/instance/WP4942_r134608 “unspecific cation channel” with graphId c46eb
- http://classic.wikipathways.org/instance/WP4942_r134608 “neocortex development” with graphId e7261
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels