wikipathways-collection

WikiPathways WP488

• WikiPathways: WP488 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 66
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 66

http://classic.wikipathways.org/instance/WP488_r117859 Abl1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3r3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Itga6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Smad3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Sfn with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Met with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lama5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lamc1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Erbb2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ntn1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Clca3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Mtor with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Prkca with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Akt1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Itgb4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ywhaz with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Shc1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Rhoa with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3r1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pak1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lamb2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Dsp with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3cg with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Smad2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ywhab with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Mmp7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Grb2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lama2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Cd151 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Eif4ebp1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Eif4e with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lama3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ar with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Col17a1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Bad with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Cdkn1a with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Rac1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Src with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Fyn with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Plec1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lamc2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Mst1r with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Egfr with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ptk2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Casp3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Clca5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Dst with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3cb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Rpsa with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lamb1-1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Irs2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3r2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3cd with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ywhah with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Pik3ca with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Rtkn with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Ywhae with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Prkcd with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Trp73 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lama1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Erbb2ip with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Yes1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Eif6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Irs1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Lamb3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP488_r117859 Vim with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping