wikipathways-collection

WikiPathways WP4876

• WikiPathways: WP4876 (classic)
• Species: Homo sapiens
• Scholia: WP4876

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 12
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 1

Fails

Possible MIM translocation

Interactions between identical nodes: 12

• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/id7ef1c6cf “pro-CASP1” (https://identifiers.org/ensembl/ENSG00000137752) and pro-CASP1” (https://identifiers.org/ensembl/ENSG00000137752)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/id7ef1c6cf “pro-CASP1” (https://identifiers.org/ensembl/ENSG00000137752) and CASP1” (https://identifiers.org/ensembl/ENSG00000137752)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/id7ef1c6cf “CASP1” (https://identifiers.org/ensembl/ENSG00000137752) and pro-CASP1” (https://identifiers.org/ensembl/ENSG00000137752)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/id7ef1c6cf “CASP1” (https://identifiers.org/ensembl/ENSG00000137752) and CASP1” (https://identifiers.org/ensembl/ENSG00000137752)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/idaa5a11ed “IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/idaa5a11ed “IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/idaa5a11ed “pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/idaa5a11ed “pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/ed3f9 “IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/ed3f9 “IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/ed3f9 “pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and IL1B” (https://identifiers.org/ensembl/ENSG00000125538)
• http://classic.wikipathways.org/instance/WP4876_r134900 http://rdf.wikipathways.org/Pathway/WP4876_r134900/WP/Interaction/ed3f9 “pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538) and pro-IL1B” (https://identifiers.org/ensembl/ENSG00000125538)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations