wikipathways-collection

WikiPathways WP4861

• WikiPathways: WP4861 (classic)
• Species: Homo sapiens
• Scholia: WP4861

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 11
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 11

• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c90ec (Amino acid synthesis Antioxidant response Apoptosis)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/e0713 (C/EBP CCAAT enhancer binding protein)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/d0da6 (CRE cAMP response element)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c085b (ER protein chaperones Lipid biosynthesis ER-associated degradation)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/e9fd9 (ER-associated mRNA)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/ed36d (Global protein translation)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/d43bc (MERS 4a)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c094e (RIDD)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/a4bee (SARS 8ab)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/dc80b (SARS, IBV infection)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/cd9a0 (SARS, OC43, MHV, IBV infection)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 2

http://classic.wikipathways.org/instance/WP4861_r135076 SARS E with datasource UniProtKB
http://classic.wikipathways.org/instance/WP4861_r135076 PP1 with datasource Wikidata

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping