wikipathways-collection

WikiPathways WP4666

• WikiPathways: WP4666 (classic)
• Species: Homo sapiens
• Scholia: WP4666

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 29
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP4666_r129538 http://rdf.wikipathways.org/Pathway/WP4666_r129538/DataNode/c0f05 (ESCRT Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 29

http://classic.wikipathways.org/instance/WP4666_r129538 "HBeAg" with graphId aa0ea
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId f70f0
http://classic.wikipathways.org/instance/WP4666_r129538 "cccDNA" with graphId c9296
http://classic.wikipathways.org/instance/WP4666_r129538 "Hepatocyte differentiation" with graphId a7212
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId c86e8
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId a914f
http://classic.wikipathways.org/instance/WP4666_r129538 "HBeAg" with graphId ecdbb
http://classic.wikipathways.org/instance/WP4666_r129538 "ER stress" with graphId e316a
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId ce30d
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId bfd26
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId b21f5
http://classic.wikipathways.org/instance/WP4666_r129538 "Proteasome" with graphId f720d
http://classic.wikipathways.org/instance/WP4666_r129538 "Control of cell growth,
apoptosis and senescense" with graphId c9523
http://classic.wikipathways.org/instance/WP4666_r129538 "Survival factors,
growth factors,
cytokines" with graphId dabf7
http://classic.wikipathways.org/instance/WP4666_r129538 "Cell proliferation
and differentiation" with graphId b3768
http://classic.wikipathways.org/instance/WP4666_r129538 "HCC invasion and metastasis" with graphId b40d7
http://classic.wikipathways.org/instance/WP4666_r129538 "Antiapoptosis" with graphId e881c
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId bced9
http://classic.wikipathways.org/instance/WP4666_r129538 "HBeAg" with graphId e748d
http://classic.wikipathways.org/instance/WP4666_r129538 "pgRNA" with graphId b1637
http://classic.wikipathways.org/instance/WP4666_r129538 "pgRNA" with graphId ec6cf
http://classic.wikipathways.org/instance/WP4666_r129538 "HCC development" with graphId ad51b
http://classic.wikipathways.org/instance/WP4666_r129538 "HBeAg" with graphId e96d0
http://classic.wikipathways.org/instance/WP4666_r129538 "HBx" with graphId ee2ff
http://classic.wikipathways.org/instance/WP4666_r129538 "LHBs" with graphId a9d8c
http://classic.wikipathways.org/instance/WP4666_r129538 "Inhibition of 
Fas-mediated apoptosis" with graphId ca256
http://classic.wikipathways.org/instance/WP4666_r129538 "Relief of HBx stability
and viral replication" with graphId a10c5
http://classic.wikipathways.org/instance/WP4666_r129538 "P" with graphId f344b
http://classic.wikipathways.org/instance/WP4666_r129538 "LHBs" with graphId f7d91

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4666_r129538 http://rdf.wikipathways.org/Pathway/WP4666_r129538/WP/Interaction/idec3b054 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations