wikipathways-collection

WikiPathways WP4658

• WikiPathways: WP4658 (classic)
• Species: Homo sapiens
• Scholia: WP4658

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP4658_r135693 http://rdf.wikipathways.org/Pathway/WP4658_r135693/DataNode/c5ccc (Cell cycle)
• http://classic.wikipathways.org/instance/WP4658_r135693 http://rdf.wikipathways.org/Pathway/WP4658_r135693/DataNode/e0ac3 (p53 signaling pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 8

http://classic.wikipathways.org/instance/WP4658_r135693 "Interrupted control of cell growth,
leading to tumor progression" with graphId cecbc
http://classic.wikipathways.org/instance/WP4658_r135693 "DNA damage" with graphId e33c0
http://classic.wikipathways.org/instance/WP4658_r135693 "G1/S progression" with graphId d0d5a
http://classic.wikipathways.org/instance/WP4658_r135693 "Inhibition of apoptosis" with graphId e07a7
http://classic.wikipathways.org/instance/WP4658_r135693 "Proliferation" with graphId a2807
http://classic.wikipathways.org/instance/WP4658_r135693 "Resistance to 
apoptotic signals" with graphId ae424
http://classic.wikipathways.org/instance/WP4658_r135693 "Uncontrolled proliferation
Increased survival
Genomic instability" with graphId ac8c8
http://classic.wikipathways.org/instance/WP4658_r135693 "Angiogenesis" with graphId b3d50

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4658_r135693 http://rdf.wikipathways.org/Pathway/WP4658_r135693/WP/Interaction/id1a8fc154 "CYCS" (https://identifiers.org/ensembl/ENSG00000172115) and 
CYCS" (https://identifiers.org/ensembl/ENSG00000172115)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations