wikipathways-collection

WikiPathways WP46

• WikiPathways: WP46 (classic)
• Species: Saccharomyces cerevisiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 4
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Possible MIM translocation

Interactions between identical nodes: 4

http://classic.wikipathways.org/instance/WP46_r117317 http://rdf.wikipathways.org/Pathway/WP46_r117317/WP/Interaction/id1e5b9638 "L-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5) and 
L-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5)
http://classic.wikipathways.org/instance/WP46_r117317 http://rdf.wikipathways.org/Pathway/WP46_r117317/WP/Interaction/id1e5b9638 "L-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5) and 
D-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5)
http://classic.wikipathways.org/instance/WP46_r117317 http://rdf.wikipathways.org/Pathway/WP46_r117317/WP/Interaction/id1e5b9638 "D-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5) and 
L-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5)
http://classic.wikipathways.org/instance/WP46_r117317 http://rdf.wikipathways.org/Pathway/WP46_r117317/WP/Interaction/id1e5b9638 "D-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5) and 
D-methylmalonyl-CoA" (https://identifiers.org/cas/1264-45-5)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP46_r117317 ‘Methionine degradation’ in Saccharomyces cerevisiae has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference