wikipathways-collection

WikiPathways WP457

• WikiPathways: WP457 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 38

http://classic.wikipathways.org/instance/WP457_r117025 Rnf25 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Birc2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Hsp90aa1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 LOC685179 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 MAP3K7IP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Cradd with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 HIST3H3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Polr1c with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Birc3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Hsp90ab1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Stat1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 YWHAQ with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 NALP4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Cflar with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Usp2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Unc5cl with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Traip with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Traf3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Rpl4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 SUMO1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Psmc1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Usp11 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Papola with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Cdc37 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Smarca4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 BCL7A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Hdac6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 PEG3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Casp8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Psmd1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Ywhaz with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Smarcc1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Map2k5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Azi2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Tbk1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Rps6ka5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Nfkbie with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP457_r117025 Ddx3x with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping