wikipathways-collection

WikiPathways WP4352

• WikiPathways: WP4352 (classic)
• Species: Homo sapiens
• Scholia: WP4352

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 21
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP4352_r134800 http://rdf.wikipathways.org/Pathway/WP4352_r134800/DataNode/a5ab9 (CLT)
• http://classic.wikipathways.org/instance/WP4352_r134800 http://rdf.wikipathways.org/Pathway/WP4352_r134800/DataNode/ec047 (COPS1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 21

http://classic.wikipathways.org/instance/WP4352_r134800 "Dynein-1" with graphId f3c6c
http://classic.wikipathways.org/instance/WP4352_r134800 "Dynein-2" with graphId cf7f3
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 28" with graphId e030d
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 3" with graphId c4521
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 26" with graphId dc266
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 15" with graphId f4411
http://classic.wikipathways.org/instance/WP4352_r134800 "BBSome" with graphId a9704
http://classic.wikipathways.org/instance/WP4352_r134800 "IFT-B2" with graphId f5caf
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 5" with graphId d7d22
http://classic.wikipathways.org/instance/WP4352_r134800 "IFT-B1" with graphId f956b
http://classic.wikipathways.org/instance/WP4352_r134800 "U4/U6-snRNP" with graphId fa662
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 16" with graphId ee2ad
http://classic.wikipathways.org/instance/WP4352_r134800 "HSF1/HSPA1L/
MAPRE2" with graphId cc604
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 19" with graphId af9fe
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 53" with graphId efeb6
http://classic.wikipathways.org/instance/WP4352_r134800 "complex FOX/RFX" with graphId c56ec
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 12" with graphId e760b
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 9" with graphId d3d04
http://classic.wikipathways.org/instance/WP4352_r134800 "U5-snRNP" with graphId ba59c
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 7" with graphId aac33
http://classic.wikipathways.org/instance/WP4352_r134800 "complex 21" with graphId aee0a