wikipathways-collection

WikiPathways WP4337

• WikiPathways: WP4337 (classic)
• Species: Homo sapiens
• Scholia: WP4337

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 3
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 3
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 3

• http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/DataNode/fdd31 (DILC)
• http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/DataNode/ecad0 (lncRNA-ATB)
• http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/DataNode/b5a63 (lncSox4)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP4337_r134811 "STAT3 target genes" with graphId b1c9b
http://classic.wikipathways.org/instance/WP4337_r134811 "Cancer stem cells
Epithelial mesenchymal transition" with graphId fe38a

Possible MIM translocation

Interactions between identical nodes: 3

http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/WP/Interaction/idfe58412a "STAT3" (https://identifiers.org/ensembl/ENSG00000168610) and 
STAT3" (https://identifiers.org/ensembl/ENSG00000168610)
http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/WP/Interaction/idfd1f2e7c "MIR21" (https://identifiers.org/ensembl/ENSG00000284190) and 
MIR21" (https://identifiers.org/ensembl/ENSG00000284190)
http://classic.wikipathways.org/instance/WP4337_r134811 http://rdf.wikipathways.org/Pathway/WP4337_r134811/WP/Interaction/c3cf7 "SOX4" (https://identifiers.org/ensembl/ENSG00000124766) and 
SOX4" (https://identifiers.org/ensembl/ENSG00000124766)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations