wikipathways-collection

WikiPathways WP4320

• WikiPathways: WP4320 (classic)
• Species: Homo sapiens
• Scholia: WP4320

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 10
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 10

http://classic.wikipathways.org/instance/WP4320_r128823 "Accumulation DNA damage" with graphId ccd7f
http://classic.wikipathways.org/instance/WP4320_r128823 "Transcription" with graphId d256d
http://classic.wikipathways.org/instance/WP4320_r128823 "Dysfunctional adipose tissue" with graphId af651
http://classic.wikipathways.org/instance/WP4320_r128823 "Bone abnormalities" with graphId e1cfc
http://classic.wikipathways.org/instance/WP4320_r128823 "Epigenetic changes" with graphId f8ac2
http://classic.wikipathways.org/instance/WP4320_r128823 "Euchromatin silencing" with graphId ee482
http://classic.wikipathways.org/instance/WP4320_r128823 "Transcription" with graphId a11e6
http://classic.wikipathways.org/instance/WP4320_r128823 "Apoptosis/senescence" with graphId c7ca8
http://classic.wikipathways.org/instance/WP4320_r128823 "Heterochromatin silencing" with graphId f5800
http://classic.wikipathways.org/instance/WP4320_r128823 "Nuclear abnormalities" with graphId d1408

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP4320_r128823 ‘Effect of progerin on genes involved in progeria’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference