wikipathways-collection

WikiPathways WP4263

• WikiPathways: WP4263 (classic)
• Species: Homo sapiens
• Scholia: WP4263

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 2
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 9
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 2

• http://classic.wikipathways.org/instance/WP4263_r134838 http://rdf.wikipathways.org/Pathway/WP4263_r134838/DataNode/fd214 (TGFb signaling pathway)
• http://classic.wikipathways.org/instance/WP4263_r134838 http://rdf.wikipathways.org/Pathway/WP4263_r134838/DataNode/ff2d3 (VEGF signaling pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions with Labels

Interactions found that involve Labels: 9

• http://classic.wikipathways.org/instance/WP4263_r134838 “DS DNA break repair” with graphId e29ed
• http://classic.wikipathways.org/instance/WP4263_r134838 “Cytoskeleton organization Cell motility” with graphId faacd
• http://classic.wikipathways.org/instance/WP4263_r134838 “Proliferative genes” with graphId bade0
• http://classic.wikipathways.org/instance/WP4263_r134838 “DNA damage” with graphId b2570
• http://classic.wikipathways.org/instance/WP4263_r134838 “Growth inhibition” with graphId a2700
• http://classic.wikipathways.org/instance/WP4263_r134838 “Angiogenesis” with graphId e7ca4
• http://classic.wikipathways.org/instance/WP4263_r134838 “Anti-apoptotic genes” with graphId ab1e8
• http://classic.wikipathways.org/instance/WP4263_r134838 “Supressed apoptosis” with graphId d9248
• http://classic.wikipathways.org/instance/WP4263_r134838 “Cell survival” with graphId ca43d

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels