wikipathways-collection

WikiPathways WP4255

• WikiPathways: WP4255 (classic)
• Species: Homo sapiens
• Scholia: WP4255

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 1
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 9
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 1

• http://classic.wikipathways.org/instance/WP4255_r127755 http://rdf.wikipathways.org/Pathway/WP4255_r127755/DataNode/e66e6 (Calcium Signaling Pathway)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 9

http://classic.wikipathways.org/instance/WP4255_r127755 "Tumor progression" with graphId f97d0
http://classic.wikipathways.org/instance/WP4255_r127755 "Cell survival" with graphId b1d8f
http://classic.wikipathways.org/instance/WP4255_r127755 "Reduced apoptosis" with graphId d0c19
http://classic.wikipathways.org/instance/WP4255_r127755 "Anti-apoptosis" with graphId f113c
http://classic.wikipathways.org/instance/WP4255_r127755 "Proliferation" with graphId b1327
http://classic.wikipathways.org/instance/WP4255_r127755 "DNA Damage" with graphId d73fb
http://classic.wikipathways.org/instance/WP4255_r127755 "Uncontrolled proliferation
Increased survival
Genomic instability" with graphId bcbf7
http://classic.wikipathways.org/instance/WP4255_r127755 "G1 to S progression" with graphId cf80a
http://classic.wikipathways.org/instance/WP4255_r127755 "Reduced apoptosis
Cell-cycle progression" with graphId d5119

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4255_r127755 http://rdf.wikipathways.org/Pathway/WP4255_r127755/WP/Interaction/id560a2d23 "Retinoic acid" (https://identifiers.org/chebi/CHEBI:6067) and 
Retinoic acid" (https://identifiers.org/chebi/CHEBI:6067)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations