wikipathways-collection

WikiPathways WP4239

• WikiPathways: WP4239 (classic)
• Species: Homo sapiens
• Scholia: WP4239

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 1
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/dd55f (Claudins)
• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/f159a (Claudins)
• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/dd1d4 (Collagen)
• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/e50ff (Cytokeratins)
• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/c15d1 (MMPs)
• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/be86c (Tyrosine kinase receptors)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Datanodes of unknown type

The following DataNodes have Unknown @Type: 1

• http://classic.wikipathways.org/instance/WP4239_r128751 http://rdf.wikipathways.org/Pathway/WP4239_r128751/DataNode/d9b43 (Hypoxia)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 3

http://classic.wikipathways.org/instance/WP4239_r128751 "Epithelial-Mesenchymal Transition" with graphId ca985
http://classic.wikipathways.org/instance/WP4239_r128751 "Ubiquitin-mediated
degradation" with graphId ef3de
http://classic.wikipathways.org/instance/WP4239_r128751 "Degradation" with graphId f191a