wikipathways-collection

WikiPathways WP4223

• WikiPathways: WP4223 (classic)
• Species: Homo sapiens
• Scholia: WP4223

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests
  • nonNumericPubMedIDs: .. all OK!
  • unexpectedPubMedIdentifier: .. all OK!
  • zeroPubMedIDs: .. all OK!
  • atLeastOneReference: .x we found 1 problem(s):
    • Found 1 pathways with zero (PubMed) references
  • citesRetractedArticle: .. all OK!
  • outdatedPubMedIdentifiers: .. all OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 3

Fails

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://classic.wikipathways.org/instance/WP4223_r135177 "Cytoskeleton organization
Cell motility" with graphId d1f85
http://classic.wikipathways.org/instance/WP4223_r135177 "Cell survival, growth, migration
Cell cycle progression
Transcription" with graphId e2d6a
http://classic.wikipathways.org/instance/WP4223_r135177 "Growth Factors" with graphId b04a7
http://classic.wikipathways.org/instance/WP4223_r135177 "Cell spreading
and migration" with graphId f26e5
http://classic.wikipathways.org/instance/WP4223_r135177 "Apoptosis
Cell-cycle arrest" with graphId e69f8
http://classic.wikipathways.org/instance/WP4223_r135177 "Endocytosis" with graphId b7a32
http://classic.wikipathways.org/instance/WP4223_r135177 "Cell-cell junctions" with graphId a54d5
http://classic.wikipathways.org/instance/WP4223_r135177 "Gene expression" with graphId a5e00
http://classic.wikipathways.org/instance/WP4223_r135177 "Endocytosis" with graphId d1398
http://classic.wikipathways.org/instance/WP4223_r135177 "Cytoskeletal remodeling" with graphId c8508
http://classic.wikipathways.org/instance/WP4223_r135177 "Gene expression" with graphId f5db3

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4223_r135177 http://rdf.wikipathways.org/Pathway/WP4223_r135177/WP/Interaction/idec2322a0 "Ca2+" (https://identifiers.org/chebi/CHEBI:29108) and 
Ca2+" (https://identifiers.org/chebi/CHEBI:29108)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

At least one reference

Found 1 pathways with zero (PubMed) references

• http://classic.wikipathways.org/instance/WP4223_r135177 ‘Ras signaling’ in Homo sapiens has zero references;

More details at https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference