wikipathways-collection

WikiPathways WP4216

• WikiPathways: WP4216 (classic)
• Species: Homo sapiens
• Scholia: WP4216

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 5
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 8
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 117
• Number of assertions: 235
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 5

• http://classic.wikipathways.org/instance/WP4216_r135166 http://rdf.wikipathways.org/Pathway/WP4216_r135166/DataNode/d373c (Apoptosis)
• http://classic.wikipathways.org/instance/WP4216_r135166 http://rdf.wikipathways.org/Pathway/WP4216_r135166/DataNode/a7aec (Cell cycle)
• http://classic.wikipathways.org/instance/WP4216_r135166 http://rdf.wikipathways.org/Pathway/WP4216_r135166/DataNode/fe29d (MAPK signaling)
• http://classic.wikipathways.org/instance/WP4216_r135166 http://rdf.wikipathways.org/Pathway/WP4216_r135166/DataNode/bd731 (PI3K)
• http://classic.wikipathways.org/instance/WP4216_r135166 http://rdf.wikipathways.org/Pathway/WP4216_r135166/DataNode/ae462 (Wnt signaling)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 8

http://classic.wikipathways.org/instance/WP4216_r135166 "Anti-apoptosis" with graphId dcb9e
http://classic.wikipathways.org/instance/WP4216_r135166 "DNA damage" with graphId dfee3
http://classic.wikipathways.org/instance/WP4216_r135166 "Proliferation" with graphId e732e
http://classic.wikipathways.org/instance/WP4216_r135166 "Cell-survival
Inflammation" with graphId bfcde
http://classic.wikipathways.org/instance/WP4216_r135166 "Loss of growth
inhibitory effects 
of TGFb" with graphId bf7cb
http://classic.wikipathways.org/instance/WP4216_r135166 "Proliferation, survival, 
migration, invasion" with graphId e89a5
http://classic.wikipathways.org/instance/WP4216_r135166 "Survival" with graphId e4041
http://classic.wikipathways.org/instance/WP4216_r135166 "Suppressed apoptosis" with graphId a6c1c