wikipathways-collection

WikiPathways WP4204

• WikiPathways: WP4204 (classic)
• Species: Homo sapiens
• Scholia: WP4204

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 9
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .x we found 1 problem(s):
    • Pathways DataNodes with WikiPathways ID that can be converted to have a RoundedRectangle ShapeType so that they become clickable: 3
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 9

• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/e1de9 (Apoptosis suppression)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/f658d (Chromatin remodeling)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/d6486 (G0/G1 transition)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/e0a18 (Polycomb pathway)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/fc178 (Proliferation)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/ad476 (Transcription)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/d6e06 (Transcription)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/e73a3 (Transcription)
• http://classic.wikipathways.org/instance/WP4204_r136357 http://rdf.wikipathways.org/Pathway/WP4204_r136357/DataNode/e4940 (Transctiptional regulation)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

PathwayTests.testRoundedRectangle

Pathways DataNodes with WikiPathways ID that can be converted to have a RoundedRectangle ShapeType so that they become clickable: 3

http://classic.wikipathways.org/instance/WP4204_r136357 -> c4a7f, WP4249
 http://classic.wikipathways.org/instance/WP4204_r136357 -> e262d, WP428
 http://classic.wikipathways.org/instance/WP4204_r136357 -> f75a5, WP179