wikipathways-collection

WikiPathways WP405

• WikiPathways: WP405 (classic)
• Species: Homo sapiens
• Scholia: WP405

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 41
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 8 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 41

http://classic.wikipathways.org/instance/WP405_r136949 POLR1A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2I with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR3K with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2E with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR3B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR1D with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2E2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR3H with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 CCNH with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2A2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2C with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2A with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2J with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF13 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2G with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR1B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2H with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2H3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 ERCC2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 ERCC3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2E1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR3D with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 MNAT1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2B with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 Polr1e with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF12 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 ILK with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2F with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2H1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2F2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2H2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TBP with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 GTF2H4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 TAF7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR2K with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 CDK7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP405_r136949 POLR3E with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping